Henning Christiansen.
Christian Theil Have, Ole Torp Lassen,
A Constraint Model for Constrained Hidden Markov Models: a first Biological Application
WCB09, Workshop on
Constraint Based Methods for Bioinformatics,
Associated to CP 2009.
Lisbon, Portugal, September 20, 2009.
 Christian Theil Have. Stochastic Definite Clause Grammars. International Conference: Recent Advances in Natural Language Processing 2009 (to appear). RANLP 2009, Recent Advances in Natural Language Processing Bulgaria, September 14-17, 2009. Available as pdf.
 Henning Christiansen, Ole Torp Lassen, Preprocessing for Optimization of Probabilistic-Logic Models for Sequence Analysis. Logic Programming. 25th International Conference, ICLP 2009. Pasadena, California, USA, July 14-17, 2009. Lecture Notes in Computer Science 5649, pp. 70-83, Springer 2009.
 Henning Christiansen, John P. Gallagher. Non-discriminating Arguments and their Uses. Logic Programming. 25th International Conference, ICLP 2009. Pasadena, California, USA, July 14-17, 2009. Lecture Notes in Computer Science 5649, pp. 55-69, Springer 2009.
(Appointed the best paper of the conference)
 Christian Theil Have, Logic-Statistic Models with Constraints for Biological Sequence Analysis, Logic Programming. 25th International Conference, ICLP 2009 (doctoral consortium). Pasadena, California, USA, July 14-17, 2009.
 Matthieu Petit, Henning Christiansen. Un calcul de Viterbi pour un Modèle de Markov Caché Contraint. 5ème Journées Francophone de Programmation par Contraintes, JFPC, Orléans, France. June 3-5, 2009.
See online proceedings
 Yuan Zhang, HongBo Liu, Overlapping Genes Detected by HMM Model in PRISM. MSc thesis, Computer SCience, Roskilde University. 2009. Available as pdf
 Ole Torp Lassen, Biosequence Analysis in PRISM. Logic Programming. 24th International Conference, ICLP 2008 (doctoral consortium). Udine, Italy, December 9-13 2008. Lecture Notes in Computer Science 5366, pp. 809-810, Springer 2008.
 Henning Christiansen, Ole Torp Lassen, Optimization and evaluation of probabilistic-logic sequence models. Proceedings of the International Workshop on Statistical and Relational Learning in Bioinformatics, StReBio’08. Associated to ECML PKDD 2008. Antwerp, Belgium, September 19, 2008.
 Henning Christiansen, Logic-statistic modeling and analysis of biological sequence data: a research agenda. A. Doncescu, P. A. Flach, K. Inoue, A. C. Kakas, O. Ray (eds.), Pre-Proceedings of the 2007 International Workshop on Abduction and Induction in Artificial Intelligence (AIAI'07). pp. 42-49. (2007).
 Henning Christiansen, Christina Mackeprang Dahmcke, A Machine Learning Approach to Test Data Generation: A Case Study in Evaluation of Gene Finders. Proceedings of MLDM'2007, Machine Learning and Data Mining in Pattern Recognition July 18-20, 2007, Leipzig/Germany, pp. 741-755. Lecture Notes in Artificial Intelligence 4571, 2007.